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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
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Posts
Opened web page!
Published:
I finally finished this web site. I might keep on adding posts here. Read more
publications
Genome sequencing of a single tardigrade Hypsibius dujardini individual
Published in Scientific data, 2016
Establishment of a method to sequence the genome from a single tardigrade speciemen. Read more
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Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
Published in PLoS Biology, 2017
My first major paper of tardigrade comparative genomics. Read more
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Ultralow Input Genome Sequencing Library Preparation from a Single Tardigrade Specimen
Published in Journal of Visualized Experiments, 2018
This video paper explains the tardigrade single indiviudal sequencing method in detail. Read more
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Orb-weaving spider Araneus ventricosus genome elucidates the spidroin gene catalogue
Published in Scientific reports, 2019
Genome of the orb-weaving spider for identification of spidroin genes Read more
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Horizontal Gene Transfer in Metazoa: Examples and Methods.
Published in Horizontal Gene Transfer (Springer), 2019
Review on horizontal gene transfer in metazoans. Read more
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Comparison of the transcriptomes of two tardigrades with different hatching coordination.
Published in BMC Developmental Biology, 2019
Transcriptome analysis of the developmental stages in two tardigrade species. Read more
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Novel family of Mn-dependent peroxidase is a critical component for anhydrobiotic survival in tardigrades
Published in bioRxiv, 2020
Identification of a novel peroxidase in tardigrades Read more
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RNA sequencing data for gamma radiation response in the extremotolerant tardigrade Ramazzottius varieornatus
Published in Data in Brief, 2021
Data paper of transcriptome sequencing in gamma ray irradiated R. varieornatus. Read more
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Genome-Wide Role of HSF1 in Transcriptional Regulation of Desiccation Tolerance in the Anhydrobiotic Cell Line, Pv11
Published in International Journal of Molecular Sciences, 2021
Adaptation of CRISPR/Cas9 technology to Pv11 cell line to understand regulation of anhydrobiosis genes through HSF1. Read more
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Multicomponent nature underlies the extraordinary mechanical properties of spider dragline silk
Published in Proceedings of the National Academy of Sciences, 2021
Multiomics analysis to understand the mechanical and sequence properties of spider dragline silk in Nephila. Read more
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Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells
Published in Scientific Reports, 2021
Application of CRISPR/Cas9 technology to identify signaling factors contributing to desiccation signaling in Pv11 cells. Read more
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Darwins bark spider shares a spidroin repertoire with Caerostris extrusa but achieves extraordinary silk toughness through gene expression
Published in Open Biology, 2021
Comparative genomics in Darwins bark spider to analyze spider silk proteins. Read more
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Tardigrade Secretory-Abundant Heat-Soluble Protein Varies Entrance Propensity Depending on the Amino-Acid Sequence.
Published in The Journal of Physical Chemistry B, 2022
MD simulation of a SAHS paralog with expression specific to the embryo Read more
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High quality assembly of anhydrobiotic midge genome provides insights on a single chromosome-based emerging of extreme desiccation tolerance
Published in Nucleic Acids Research Genomics and Bioinformatics, 2022
Chromosomal genome assembly of Polypedilum vanderplanki indicates chromosome IV as a foundation of novel gene accumulation enabling rapid adaptation. Read more
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Time-series transcriptomic screening of factors contributing to the cross-tolerance to UV radiation and anhydrobiosis in tardigrades
Published in BMC Genomics, 2022
Identification of a tardigrade specific novel peroxidase Read more
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Deciphering the Biological Enigma—Genomic Evolution Underlying Anhydrobiosis in the Phylum Tardigrada and the Chironomid Polypedilum vanderplanki
Published in Insects, 2022
Review of genomic evolution in Tardigrades and anhydrobiotic midges. Read more
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talks
高線量γ線に対するヨコヅナクマムシの応答解明に向けた経時的微量トランスクリプトーム解析
Published:
吉田祐貴, 堀川大樹, 坂下哲哉, 小林泰彦, 冨田勝, 荒川和晴. 高線量γ線に対するヨコヅナクマムシの応答解明に向けた経時的微量トランスクリプトーム解析 Read more
ヨコヅナクマムシの乾眠関連遺伝子の網羅的同定へむけて
Published:
吉田祐貴, 堀川大樹, 坂下哲哉, 國枝武和, 桑原宏和, 豊田敦, 片山俊明, 小林泰彦, 冨田勝, 荒川和晴. ヨコヅナクマムシの乾眠関連遺伝子の網羅的同定へむけて Read more
MetaSUB (Co-author only)
Published:
Watabe T., Yoshida Y., Suzuki H., Arakawa K., Tomita M., Fukuda S. Draft genome sequences of Bifidobacterum longum strains from two healthy Japanese adults Read more
ドゥジャルダンヤマクマムシとヨコヅナクマムシの比較ゲノム解析
Published:
吉田祐貴, Koutsovoulos G., Laetsch D. R., Stevens L., Kumar S., 堀川大樹, 石野響子, 小峰栞, 國枝武和, 冨田勝, Blaxter M., 荒川和晴. ドゥジャルダンヤマクマムシとヨコヅナクマムシの比較ゲノム解析 Read more
SCAR Biology Symposium (Co-author only)
Published:
Co-authored presentations only
Tsujimoto M., Yoshida Y., Imura S., Arakawa K. Comparative transcriptome analysis of the Antarctic tardigrade, Acutuncus antarcticus, in response to changes in temperature Read moreComparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
Published:
Yoshida Y., Koutsovoulos G., Laetsch D. R., Stevens L., Kumar S., Horikawa D. D., Ishino K., Komine S., Kunieda T., Tomita M., Blaxter M., Arakawa K. “Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus”. Read more
乾眠能力の異なる二種のクマムシの比較ゲノム解析
Published:
吉田 祐貴, Koutsovoulos G., Laetsch D. R., Stevens L., Kumar S., 堀川大樹, 石野響子, 小峰栞, 國枝武和, 冨田勝, Blaxter M., 荒川 和晴. 乾眠能力の異なる二種のクマムシの比較ゲノム解析 Read more
ドゥジャルダンヤマクマムシとヨコヅナクマムシの比較ゲノム解析
Published:
吉田祐貴, Koutsovoulos G., Laetsch D. R., Stevens L., Kumar S., 堀川大樹, 石野響子, 小峰栞, 國枝武和, 冨田勝, Blaxter M., 荒川和晴. ドゥジャルダンヤマクマムシとヨコヅナクマムシの比較ゲノム解析 Read more
49rd Annual Meeting of Arachnological Society of Japan (Co-author only)
Published:
Co-authored presentations only
- 荒川和晴, 河野暢明, 藤原正幸, 中村浩之, 大利麟太郎, 高井幸, 斧澤佑紀, 吉田祐貴, 阿部望美, 石井菜穂子, 冨田勝. クモ類網羅的シーケンシングによる超高機能発現メカニズムの解明
- 河野暢明, 藤原正幸, 中村浩之, 大利麟太郎, 高井幸, 斧澤佑紀, 吉田祐貴, 阿部望美, 石井菜穂子, 冨田勝, 荒川和晴. マルチオミクス解析から見た蜘蛛糸の系統的多様性
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus
Published:
Yoshida Y., Koutsovoulos G., Laetsch D. R., Stevens L., Kumar S., Horikawa D. D., Ishino K., Komine S., Kunieda T., Tomita M., Blaxter M., Arakawa K. “Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus” Read more
短波長紫外線へ曝露されたヨコヅナクマムシのトランスクリプトーム解析
Published:
吉田祐貴, 堀川大樹, 冨田勝, 荒川和晴. 短波長紫外線へ曝露されたヨコヅナクマムシのトランスクリプトーム解析 Read more
ヨコヅナクマムシとドゥジャルダンヤマクマムシの比較ゲノム解析
Published:
吉田祐貴, Koutsovoulos G., Laetsch D. R., Stevens L., Kumar S., 堀川大樹, 石野響子, 小峰栞, 國枝武和, 冨田勝, Blaxter M., 荒川和晴. ヨコヅナクマムシとドゥジャルダンヤマクマムシの比較ゲノム解析 Read more
短波長紫外線へ曝露された横綱クマムシのトランスクリプトーム解析
Published:
吉田祐貴, 堀川大樹, 冨田勝, 荒川和晴. 短波長紫外線へ曝露された横綱クマムシのトランスクリプトーム解析 Read more
短波長紫外線に曝露したヨコヅナクマムシのトランスクリプトーム解析
Published:
吉田祐貴, 堀川大樹, 冨田勝, 荒川和晴. 短波長紫外線に曝露したヨコヅナクマムシのトランスクリプトーム解析 Read more
発生3日目がクマムシ Hypsibus exemplarisの孵化に重要である
Published:
吉田祐貴, 杉浦健太, 冨田勝, 松本緑, 荒川和晴. 発生3日目がクマムシ Hypsibus exemplarisの孵化に重要である Read more
短波長紫外線に曝露したヨコヅナクマムシのトランスクリプトーム解析
Published:
吉田祐貴, 堀川大樹, 冨田勝, 荒川和晴. 短波長紫外線に曝露したヨコヅナクマムシのトランスクリプトーム解析 Read more
オミクス解析による緩歩動物特異的な新規抗酸化遺伝子の探索
Published:
吉田祐貴, 佐藤匡史, 太田知世, 堀川大樹, 冨田勝, 加藤晃一, 荒川和晴. オミクス解析による緩歩動物特異的な新規抗酸化遺伝子の探索 Read more
Cap Trap RNA-Seqを用いた乾眠性ユスリカのトランスクリプトーム解析
Published:
吉田祐貴, Olga K, 伊藤昌可, 田上道平, 山田貴大, Cherkasov A, Deviatiiarov R, 徳本翔子, 宮田佑吾, Cornette R, 村田光義, 末木広美, 石山美樹, 野間将平, 舟橋啓, 冨田勝, Gusev O, 黄川田隆洋. Cap Trap RNA-Seqを用いた乾眠性ユスリカのトランスクリプトーム解析 Read more
A single chromosome driving rapid extremotolerant adaptation in an insect
Published:
Yoshida Y., Kozlova O., Shaikhutdinov N., Gusev O., Kikawada T. “A single chromosome driving rapid extremotolerant adaptation in an insect” Read more
乾眠能力の異なる二種のクマムシの比較ゲノム解析
Published:
吉田祐貴, 荒川和晴. 乾眠能力の異なる二種のクマムシの比較ゲノム解析 Read more
High throughput genotype-phenotype linkage by Raman microscopy
Published:
Yuki Yoshida, Reiko Okura, Kenichiro Kamei, Yuichi Wakamoto. “High throughput genotype-phenotype linkage by Raman microscopy”. Read more
ゲノムから紐解く乾眠の進化
Published:
Yuki Yoshida “ゲノムから紐解く乾眠の進化” Read more
High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance
Published:
Yuki Yoshida “High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance” Read more
ネムリユスリカの極限環境適応へ寄与した染色体レベルのゲノムの偏り
Published:
Invited talk for the Symposium “ゲノムの場”の不均一性が駆動する遺伝子進化. 吉田祐貴, Richard Cornette, Oleg Gusev, 黄川田隆洋, “ネムリユスリカの極限環境適応へ寄与した染色体レベルのゲノムの偏り” Read more
teaching
Genomic Molecular Biology 2
Undergraduate course, Keio University, Faculty of Environment and Information Studies, 2018